RNA structures (DSSR)

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DSSR-NAR paper Scripts and data files for reproducing results reported in the DSSR-NAR paper. Moderator: xiangjun	19 Posts 19 Topics	Last post by xiangjun in RNA cartoon-block repres... on July 24, 2015, 02:18:56 pm
GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	32 Posts 7 Topics	Last post by shuxiang in Re: Figure 6. Molecular ... on June 26, 2019, 01:20:18 pm
DSSR-Jmol integration Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures. Moderator: xiangjun	5 Posts 5 Topics	Last post by xiangjun in cover image on June 30, 2017, 01:56:36 pm
Web-DSSR A web-interface to DSSR for the analysis and annotation of RNA 3D structures Moderator: shuxiang	1 Posts 1 Topics	Last post by shuxiang in Web DSSR for dissecting ... on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR release history Started by xiangjun	0 Replies 8399 Views	October 31, 2013, 11:24:21 am by xiangjun
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 7793 Views	March 28, 2015, 12:42:38 pm by xiangjun
What can 3DNA do for RNA structures? Started by xiangjun	0 Replies 6469 Views	March 06, 2012, 08:33:34 pm by xiangjun
Single-Stranded Based Zp Parameter Started by slaw	5 Replies 6286 Views	April 19, 2012, 06:05:44 pm by slaw
Can 3DNA be used to build a miRNA-target structure? Started by GuidoLeoni	5 Replies 5553 Views	November 22, 2012, 06:56:09 am by GuidoLeoni
DSSR: Software for Defining the (Secondary) Structures of RNA Started by xiangjun	0 Replies 10732 Views	March 03, 2013, 10:59:17 pm by xiangjun
What are the definitions of helix, stem, step etc in DSSR? Started by kailsen	1 Replies 3538 Views	March 10, 2013, 10:44:05 am by xiangjun
DSSR - List of bases involved in hairpins? Started by jyvdf3asdg2	3 Replies 4248 Views	March 14, 2013, 07:57:31 pm by jyvdf3asdg2
DSSR output - Base pair characteristics Started by jctoledo	2 Replies 5011 Views	March 26, 2013, 01:56:53 pm by jctoledo
Further note on DSSR Started by xiangjun	0 Replies 3551 Views	April 25, 2013, 01:13:56 pm by xiangjun
Rendering Images of RNA Started by Pablo Ricardo Arantes	2 Replies 4863 Views	May 01, 2013, 10:04:33 pm by xiangjun
list nucleotide/nucleotide contacts involving a phosphate group. Started by Auffinger	12 Replies 17706 Views	May 07, 2013, 01:56:40 pm by xiangjun
C-H...O bonds Started by Auffinger	1 Replies 3648 Views	June 06, 2013, 03:30:09 pm by xiangjun
Parsing the base pair identifiers - separating base type from base number Started by jyvdf3asdg2	5 Replies 5825 Views	June 07, 2013, 10:04:59 am by jyvdf3asdg2
Delineating the components of bulges, internal loops, junctions, etc Started by jyvdf3asdg2	10 Replies 10178 Views	June 10, 2013, 11:23:01 pm by xiangjun
A/B/Z forms Started by Auffinger	2 Replies 4971 Views	August 05, 2013, 08:54:29 am by Auffinger
dssr issue (for modified pdb files) Started by Auffinger	2 Replies 4431 Views	September 04, 2013, 09:16:51 am by Auffinger
issues in converting pdb to "dot bracket notation" Started by bchetnani	2 Replies 4110 Views	September 14, 2013, 11:30:19 pm by bchetnani
dealing with symmetrics Started by Auffinger	10 Replies 9300 Views	September 18, 2013, 03:17:13 pm by xiangjun
dssr parameters Started by Auffinger	10 Replies 8174 Views	October 17, 2013, 11:25:05 am by xiangjun

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