3DNA Forum - Index

Welcome
	Site announcements Messages from the site administrator on 3DNA	33 Posts 28 Topics	Last post by xiangjun in DSSR-enhanced visualizat... on December 02, 2019, 12:33:46 pm
	Feature requests Request for new features	77 Posts 19 Topics	Last post by xiangjun in Re: Mutate_Bases: Option... on May 11, 2020, 12:13:31 am
	Bug reports 3DNA bug reports	38 Posts 16 Topics	Last post by xiangjun in MOVED: modified nucleoti... on February 05, 2020, 08:54:25 am

Questions and answers
	RNA structures (DSSR) For the analysis of RNA structures	666 Posts 142 Topics	Last post by xiangjun in Re: dssr stdin on May 31, 2020, 11:37:20 am
	Child Boards: DSSR-NAR paper, DSSR-Jmol integration
	DNA/RNA-protein interactions (SNAP) Systemic characterizations of DNA-protein or RNA-protein complexes	63 Posts 15 Topics	Last post by xiangjun in Re: Visualization of SNA... on May 15, 2020, 12:20:17 pm
	General discussions (Q&As) On topics related to the 3DNA software package	1431 Posts 368 Topics	Last post by xiangjun in Re: Setting up 3D-DART w... on May 28, 2020, 12:46:39 am
	MD simulations Topics on the analysis of MD simulation trajectories with 3DNA	315 Posts 55 Topics	Last post by xiangjun in Re: Filter frayed ends o... on October 11, 2019, 08:54:11 am
	w3DNA -- web interface to 3DNA Web 3DNA has been upgraded to version 2 (http://web.x3dna.org) Moderator: shuxiang	113 Posts 33 Topics	Last post by xiangjun in Re: Standard Values for ... on April 23, 2020, 09:34:04 am
	Child Boards: web 3DNA 2.0 (http://web.x3dna.org)

Documentation
	FAQs A collection of frequently asked questions and answers.	48 Posts 14 Topics	Last post by xiangjun in Re: How do I build nucle... on April 18, 2020, 08:56:09 pm
	Howtos Worked examples on how to achieve some specific goals.	179 Posts 28 Topics	Last post by xiangjun in Re: Mac OSX Compilation ... on April 02, 2018, 03:43:08 pm
	Programs Online help page for each individual scripts and programs.	13 Posts 3 Topics	Last post by xiangjun in Re: blocview on June 20, 2018, 01:21:05 pm
	GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	32 Posts 7 Topics	Last post by shuxiang in Re: Figure 6. Molecular ... on June 26, 2019, 01:20:18 pm

Miscellaneous
	JoVE Topics related to the 3DNA (2013) JoVE article Moderator: acolasanti	7 Posts 4 Topics	Last post by aathithya in Re: Jove Questions and S... on January 27, 2020, 07:10:31 am
	Standards Background information and technical details on the standard base reference frame.	9 Posts 3 Topics	Last post by bciezah1 in Re: Standards on definin... on April 02, 2017, 12:53:48 pm
	Users' contributions Users' contributed scripts, utility programs or recipes related to 3DNA	11 Posts 7 Topics	Last post by xiangjun in Re: DNA conformational e... on November 25, 2013, 01:58:57 pm
	Related topics Other software, websites, databases, or comments related to 3DNA	34 Posts 11 Topics	Last post by febos in Re: What other software ... on February 05, 2014, 01:21:46 am
	SCHNAaP/SCHNArP SCHNAaP/SCHNArP and CEHS for double helices	20 Posts 5 Topics	Last post by xiangjun in Re: What and why re: SCH... on July 27, 2015, 12:20:05 pm

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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