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3DNA bug reports

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Questions and answers

No New Posts DNA/RNA-protein interactions (SNAP)

Systemic characterizations of DNA-protein or RNA-protein complexes

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No New Posts RNA structures (DSSR)

For the analysis of RNA structures

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Child Boards: DSSR-NAR paper, GA pairs in RNA folding, DSSR-Jmol integration, Web-DSSR
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On topics related to the 3DNA software package

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Topics on the analysis of MD simulation trajectories with 3DNA

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No New Posts w3DNA -- web interface to 3DNA

Web 3DNA has been upgraded to version 2 (

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Child Boards: web 3DNA 2.0 (


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A collection of frequently asked questions and answers.

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Worked examples on how to achieve some specific goals.

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Online help page for each individual scripts and programs.

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Topics related to the 3DNA (2013) JoVE article

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No New Posts Standards

Background information and technical details on the standard base reference frame.

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Users' contributed scripts, utility programs or recipes related to 3DNA

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SCHNAaP/SCHNArP and CEHS for double helices

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.