RNA structures (DSSR)

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DSSR-NAR paper

Scripts and data files for reproducing results reported in the DSSR-NAR paper.

Moderator: xiangjun

19 Posts
19 Topics

Last post by xiangjun
in RNA cartoon-block repres...
on July 24, 2015, 02:18:56 pm

DSSR-Jmol integration

Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures.

Moderator: xiangjun

5 Posts
5 Topics

Last post by xiangjun
in cover image
on June 30, 2017, 01:56:36 pm

Web-DSSR

A web-interface to DSSR for the analysis and annotation of RNA 3D structures

Moderator: shuxiang

1 Posts
1 Topics

Last post by shuxiang
in Web DSSR for dissecting ...
on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR release history Started by xiangjun	0 Replies 6171 Views	October 31, 2013, 11:24:21 am by xiangjun
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 5681 Views	March 28, 2015, 12:42:38 pm by xiangjun
negative stretch and opening in RNA pairs Started by acolasanti	1 Replies 2911 Views	March 07, 2014, 01:30:45 pm by xiangjun
C-H...O bonds Started by Auffinger	1 Replies 2640 Views	June 06, 2013, 03:30:09 pm by xiangjun
dssr parameters Started by Auffinger	10 Replies 6464 Views	October 17, 2013, 11:25:05 am by xiangjun
list nucleotide/nucleotide contacts involving a phosphate group. Started by Auffinger	12 Replies 16015 Views	May 07, 2013, 01:56:40 pm by xiangjun
possible issue with capping interaction Started by Auffinger	3 Replies 3158 Views	February 15, 2015, 12:08:35 pm by xiangjun
dssr issue (for modified pdb files) Started by Auffinger	2 Replies 3505 Views	September 04, 2013, 09:16:51 am by Auffinger
dealing with symmetrics Started by Auffinger	10 Replies 7446 Views	September 18, 2013, 03:17:13 pm by xiangjun
dssr corrupted double-linked list: issue Started by Auffinger	2 Replies 4422 Views	January 31, 2014, 03:24:51 pm by xiangjun
A/B/Z forms Started by Auffinger	2 Replies 3871 Views	August 05, 2013, 08:54:29 am by Auffinger
issues in converting pdb to "dot bracket notation" Started by bchetnani	2 Replies 3221 Views	September 14, 2013, 11:30:19 pm by bchetnani
human telomeric g quadruplex - base stacking energy Started by bciezah1	2 Replies 1323 Views	November 13, 2017, 08:58:12 am by bciezah1
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 69 Views	September 06, 2018, 09:54:01 am by xiangjun
Chain names in DSSR JSON output for PDB Biological Assemblies Started by chemikeris	4 Replies 1419 Views	December 19, 2017, 01:30:02 pm by xiangjun
Quantifying base stacking interactions Started by chubetty	1 Replies 1338 Views	August 17, 2017, 03:30:03 pm by xiangjun
Bending angle of internal loops Started by cigdem	5 Replies 2983 Views	July 22, 2016, 02:40:42 pm by xiangjun
1MZP Started by cigdem	2 Replies 2211 Views	August 23, 2016, 04:31:22 pm by cigdem
DSSR release -- Congratulations! Started by cllawson	5 Replies 4319 Views	April 14, 2014, 03:54:22 pm by xiangjun
using DSSR ct files for input to VARNA Started by cllawson	3 Replies 2524 Views	May 25, 2016, 11:38:31 am by xiangjun

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