RNA structures (DSSR)

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DSSR-NAR paper Scripts and data files for reproducing results reported in the DSSR-NAR paper. Moderator: xiangjun	19 Posts 19 Topics	Last post by xiangjun in RNA cartoon-block repres... on July 24, 2015, 02:18:56 pm
GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	32 Posts 7 Topics	Last post by shuxiang in Re: Figure 6. Molecular ... on June 26, 2019, 01:20:18 pm
DSSR-Jmol integration Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures. Moderator: xiangjun	5 Posts 5 Topics	Last post by xiangjun in cover image on June 30, 2017, 01:56:36 pm
Web-DSSR A web-interface to DSSR for the analysis and annotation of RNA 3D structures Moderator: shuxiang	1 Posts 1 Topics	Last post by shuxiang in Web DSSR for dissecting ... on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR release history Started by xiangjun	0 Replies 8421 Views	October 31, 2013, 11:24:21 am by xiangjun
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 7831 Views	March 28, 2015, 12:42:38 pm by xiangjun
negative stretch and opening in RNA pairs Started by acolasanti	1 Replies 3780 Views	March 07, 2014, 01:30:45 pm by xiangjun
--nmr option with --get-hbond & --analyze Started by amirtaghavi	3 Replies 249 Views	July 27, 2019, 10:00:53 am by xiangjun
dealing with symmetrics Started by Auffinger	10 Replies 9327 Views	September 18, 2013, 03:17:13 pm by xiangjun
possible issue with capping interaction Started by Auffinger	3 Replies 3963 Views	February 15, 2015, 12:08:35 pm by xiangjun
dssr corrupted double-linked list: issue Started by Auffinger	2 Replies 5523 Views	January 31, 2014, 03:24:51 pm by xiangjun
dssr issue (for modified pdb files) Started by Auffinger	2 Replies 4435 Views	September 04, 2013, 09:16:51 am by Auffinger
list nucleotide/nucleotide contacts involving a phosphate group. Started by Auffinger	12 Replies 17722 Views	May 07, 2013, 01:56:40 pm by xiangjun
dssr parameters Started by Auffinger	10 Replies 8189 Views	October 17, 2013, 11:25:05 am by xiangjun
A/B/Z forms Started by Auffinger	2 Replies 4987 Views	August 05, 2013, 08:54:29 am by Auffinger
C-H...O bonds Started by Auffinger	1 Replies 3658 Views	June 06, 2013, 03:30:09 pm by xiangjun
issues in converting pdb to "dot bracket notation" Started by bchetnani	2 Replies 4127 Views	September 14, 2013, 11:30:19 pm by bchetnani
human telomeric g quadruplex - base stacking energy Started by bciezah1	2 Replies 2708 Views	November 13, 2017, 08:58:12 am by bciezah1
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 1779 Views	September 06, 2018, 09:54:01 am by xiangjun
Chain names in DSSR JSON output for PDB Biological Assemblies Started by chemikeris	4 Replies 2590 Views	December 19, 2017, 01:30:02 pm by xiangjun
how to define base pair and co-stacking Started by chenjief	1 Replies 246 Views	August 01, 2019, 11:56:33 am by xiangjun
Quantifying base stacking interactions Started by chubetty	1 Replies 2178 Views	August 17, 2017, 03:30:03 pm by xiangjun
1MZP Started by cigdem	2 Replies 2936 Views	August 23, 2016, 04:31:22 pm by cigdem
Bending angle of internal loops Started by cigdem	5 Replies 3765 Views	July 22, 2016, 02:40:42 pm by xiangjun

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