RNA structures (DSSR)

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DSSR-NAR paper Scripts and data files for reproducing results reported in the DSSR-NAR paper. Moderator: xiangjun	19 Posts 19 Topics	Last post by xiangjun in RNA cartoon-block repres... on July 24, 2015, 02:18:56 pm
GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	32 Posts 7 Topics	Last post by shuxiang in Re: Figure 6. Molecular ... on June 26, 2019, 01:20:18 pm
DSSR-Jmol integration Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures. Moderator: xiangjun	5 Posts 5 Topics	Last post by xiangjun in cover image on June 30, 2017, 01:56:36 pm
Web-DSSR A web-interface to DSSR for the analysis and annotation of RNA 3D structures Moderator: shuxiang	1 Posts 1 Topics	Last post by shuxiang in Web DSSR for dissecting ... on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 8736 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 9312 Views	October 31, 2013, 11:24:21 am by xiangjun
What can 3DNA do for RNA structures? Started by xiangjun	0 Replies 6930 Views	March 06, 2012, 08:33:34 pm by xiangjun
MOVED: Dinucleotide step parameters for "ideal" A-form RNA Started by xiangjun	0 Replies 2455 Views	September 11, 2015, 03:52:08 pm by xiangjun
DSSR: Software for Defining the (Secondary) Structures of RNA Started by xiangjun	0 Replies 11144 Views	March 03, 2013, 10:59:17 pm by xiangjun
Proposed changes in DSSR v1.2 Started by xiangjun	0 Replies 3038 Views	December 03, 2014, 02:20:58 pm by xiangjun
Further note on DSSR Started by xiangjun	0 Replies 3852 Views	April 25, 2013, 01:13:56 pm by xiangjun
MD torsions Started by ida	1 Replies 2551 Views	May 03, 2016, 11:00:57 am by xiangjun
Torsion angles Started by sharvey7	1 Replies 3972 Views	July 16, 2015, 02:59:27 pm by xiangjun
modified RNA Started by namazi	1 Replies 4214 Views	June 10, 2015, 12:08:06 pm by xiangjun
1ffk missing nucleotides? Started by erikbike	1 Replies 3686 Views	May 21, 2015, 10:13:48 pm by xiangjun
DSSR output path Started by KerstinRe	1 Replies 3496 Views	November 17, 2014, 11:58:40 am by xiangjun
Lost info in CT output Started by Sylverlin	1 Replies 3931 Views	November 02, 2014, 10:50:44 am by xiangjun
Can we output helix-junction-helix structure using DSSR Started by lvelve0901	1 Replies 3053 Views	April 28, 2017, 03:39:23 pm by xiangjun
X3DNA-dssr appening pdb outputs than overwriting Started by raghavbioinfo	1 Replies 2444 Views	September 08, 2016, 12:13:56 pm by xiangjun
Analyzing more than 900 RNA structures Started by zainab fadhil	1 Replies 2824 Views	December 19, 2016, 09:56:24 pm by xiangjun
Running 1ehz example: issue .ntParams Started by jimamoto	1 Replies 92 Views	February 28, 2020, 06:47:17 pm by xiangjun
Calculate base step parameters manually Started by m.bruist	1 Replies 123 Views	February 22, 2020, 06:52:57 pm by xiangjun
Stacking parameters (again) Started by spoblete	1 Replies 728 Views	August 27, 2019, 10:31:45 pm by xiangjun
how to define base pair and co-stacking Started by chenjief	1 Replies 929 Views	August 01, 2019, 11:56:33 am by xiangjun

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