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Author Topic: do_x3dna as a plugin for VMD and update in dnaMD  (Read 81 times)

Offline Rajendra Kumar

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do_x3dna as a plugin for VMD and update in dnaMD
« on: November 01, 2017, 06:16:55 am »
Hello,

I have developed do_x3dna as a plugin for VMD (http://do-x3dna.readthedocs.io/en/latest/vmd_plugin.html). Now, two variants of do_x3dna are available, one for GROMACS and other as a plugin for VMD.

Now dnaMD can be used as both Python module (http://do-x3dna.readthedocs.io/en/latest/api_summary.html)) and command line tools (http://do-x3dna.readthedocs.io/en/latest/dnaMD_usage.html). I am still expanding the dnaMD command. dnaMD can be installed easily through pip (http://do-x3dna.readthedocs.io/en/latest/install_dnaMD.html).

With best regards,
Rajendra
« Last Edit: November 01, 2017, 06:25:05 am by rajendra_kumar »

Offline xiangjun

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Re: do_x3dna as a plugin for VMD and update in dnaMD
« Reply #1 on: November 01, 2017, 08:29:13 am »
Hi Rajendra,

Nice effort! Now do_x3dna and 3DNA are reaily accessible to the huge VMD user community.

Thanks for keep us informed of your new progress!

Xiang-Jun
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

 

Created and maintained by Dr. Xiang-Jun Lu[律祥俊]· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.