MD simulations

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Subject / Started by	Replies / Views	Last post
do_x3dna: a tool to analyze DNA/RNA in molecular dynamics trajectories Started by Rajendra Kumar	6 Replies 219036 Views	June 17, 2017, 09:59:56 am by xiangjun
Analysis of Amber .mdcrd File Started by rwmolt	3 Replies 156923 Views	June 15, 2017, 12:07:32 pm by xiangjun
"Ruby in cygwin" Started by bciezah1	3 Replies 152511 Views	April 06, 2017, 10:59:33 am by bciezah1
Average or Global properties from a simulation Started by metoo	2 Replies 148680 Views	March 24, 2017, 07:45:55 am by metoo
A-Form B-Form RNA/DNA Started by drknnetz	4 Replies 230905 Views	March 23, 2017, 10:44:59 am by xiangjun
x3dna_ensemble analysis error Started by bratarajghosh	8 Replies 203050 Views	December 02, 2016, 12:14:32 am by bratarajghosh
Problem with x3dna_ensemble analyze Started by aimeeli66	7 Replies 184294 Views	November 23, 2016, 12:13:11 pm by aimeeli66
How to fix the phosphate on the DNA backbone Started by tpc2005	3 Replies 131354 Views	November 20, 2016, 03:31:26 am by tpc2005
MOVED: Concatenated Helices Started by xiangjun	0 Replies 140704 Views	August 29, 2016, 12:19:08 pm by xiangjun
x3dna_ensemble extract output naming Started by chenyuwai	2 Replies 109527 Views	December 05, 2015, 05:39:39 pm by chenyuwai
How to Analysis the Conformation Parameters of Unnatural base in MD Started by shengxiehuang	10 Replies 191097 Views	November 07, 2015, 02:41:44 am by shengxiehuang
base overlap Started by maryatx3dna	2 Replies 127775 Views	July 26, 2015, 11:39:16 am by maryatx3dna
MOVED: modified RNA Started by xiangjun	0 Replies 109980 Views	June 10, 2015, 12:33:54 pm by xiangjun
analysis of new bases Started by sryatpku	7 Replies 126759 Views	May 07, 2015, 11:37:49 am by xiangjun
3DNA changes base-pair order Started by armanf	11 Replies 158303 Views	April 21, 2015, 11:16:26 am by armanf
auxiliary.par and analysis pdb files with multiple frames? Started by wwang02	1 Replies 102190 Views	October 06, 2014, 02:48:01 pm by xiangjun
How is the helix axis calculated in 3DNA Started by wwang02	4 Replies 119656 Views	September 29, 2014, 11:33:18 pm by wwang02
Runing find_pair to analyze MD trajectory Started by Pablo Ricardo Arantes	1 Replies 136157 Views	February 14, 2014, 07:54:10 am by xiangjun
errors when I run find_pair Started by shabeir	6 Replies 141789 Views	February 06, 2014, 03:46:01 pm by shabeir
dna torsional angle wheels Started by ara	1 Replies 131730 Views	December 14, 2013, 11:37:55 am by xiangjun

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