Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Author Topic: base overlap  (Read 23315 times)

Offline maryatx3dna

  • with-posts
  • *
  • Posts: 27
    • View Profile
base overlap
« on: July 25, 2015, 03:55:43 am »
Sir,

is there any way i could extract the stacked base overlap area as a function of time?
could i extract overlap area in analysis o/p

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1650
    • View Profile
    • 3DNA homepage
Re: base overlap
« Reply #1 on: July 25, 2015, 09:34:41 am »
Will the Ruby script x3dna_ensemble distributed with 3DNA do the trick?

Alternatively, you may want to get do_x3dna a try.

HTH,

Xiang-Jun

Offline maryatx3dna

  • with-posts
  • *
  • Posts: 27
    • View Profile
Re: base overlap
« Reply #2 on: July 26, 2015, 11:39:16 am »
ok sir

 

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University