RNA structures (DSSR)

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DSSR-NAR paper Scripts and data files for reproducing results reported in the DSSR-NAR paper. Moderator: xiangjun	19 Posts 19 Topics	Last post by xiangjun in RNA cartoon-block repres... on July 24, 2015, 02:18:56 pm
GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	32 Posts 7 Topics	Last post by shuxiang in Re: Figure 6. Molecular ... on June 26, 2019, 01:20:18 pm
DSSR-Jmol integration Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures. Moderator: xiangjun	5 Posts 5 Topics	Last post by xiangjun in cover image on June 30, 2017, 01:56:36 pm
Web-DSSR A web-interface to DSSR for the analysis and annotation of RNA 3D structures Moderator: shuxiang	1 Posts 1 Topics	Last post by shuxiang in Web DSSR for dissecting ... on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 8741 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 9316 Views	October 31, 2013, 11:24:21 am by xiangjun
Running 1ehz example: issue .ntParams Started by jimamoto	1 Replies 94 Views	February 28, 2020, 06:47:17 pm by xiangjun
Calculate base step parameters manually Started by m.bruist	1 Replies 124 Views	February 22, 2020, 06:52:57 pm by xiangjun
How to detect very distorted base pair? Started by lvelve0901	2 Replies 139 Views	January 20, 2020, 07:03:32 pm by lvelve0901
Documentation of the Json output fields ? Started by persalteas	3 Replies 159 Views	March 13, 2020, 09:24:28 am by xiangjun
SASA of nucleobases Started by Mohit Chawla	3 Replies 180 Views	February 06, 2020, 04:56:32 pm by xiangjun
modified nucleotides incorrect. Started by tctcab	5 Replies 210 Views	February 05, 2020, 10:13:05 pm by tctcab
Problem using --pair-list options Started by angel	4 Replies 223 Views	February 14, 2020, 10:30:52 am by xiangjun
[Solved] Batch-processing structures with analyze -t Started by persalteas	3 Replies 233 Views	January 06, 2020, 08:23:13 pm by xiangjun
Stacking parameters (again) Started by spoblete	1 Replies 730 Views	August 27, 2019, 10:31:45 pm by xiangjun
--nmr option with --get-hbond & --analyze Started by amirtaghavi	3 Replies 849 Views	July 27, 2019, 10:00:53 am by xiangjun
how to define base pair and co-stacking Started by chenjief	1 Replies 930 Views	August 01, 2019, 11:56:33 am by xiangjun
Avoiding pairing that cross chains Started by eswright	6 Replies 1018 Views	July 27, 2019, 01:19:34 pm by eswright
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 1031 Views	June 21, 2019, 03:31:57 pm by shuxiang
DSSR of 32 bit version Started by lijun	7 Replies 1046 Views	August 28, 2019, 12:37:44 pm by xiangjun
Noncanonical base pair standards Started by m.bruist	3 Replies 1208 Views	August 01, 2019, 11:30:40 am by xiangjun
Using dssr to analyze PDB containing multiple frames Started by jimamoto	3 Replies 1385 Views	March 08, 2019, 10:45:24 pm by xiangjun
no nucleotide in some structures Started by shuxiang	2 Replies 1453 Views	February 11, 2019, 11:41:21 am by shuxiang
Stacking parameters Started by spoblete	1 Replies 1733 Views	December 27, 2018, 02:08:45 pm by xiangjun

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