RNA structures (DSSR)

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DSSR-NAR paper

Scripts and data files for reproducing results reported in the DSSR-NAR paper.

Moderator: xiangjun

19 Posts
19 Topics

Last post by xiangjun
in RNA cartoon-block repres...
on July 24, 2015, 02:18:56 pm

DSSR-Jmol integration

Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures.

Moderator: xiangjun

5 Posts
5 Topics

Last post by xiangjun
in cover image
on June 30, 2017, 01:56:36 pm

Web-DSSR

A web-interface to DSSR for the analysis and annotation of RNA 3D structures

Moderator: shuxiang

1 Posts
1 Topics

Last post by shuxiang
in Web DSSR for dissecting ...
on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 5681 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 6171 Views	October 31, 2013, 11:24:21 am by xiangjun
significance of character "P" Started by laura savana	2 Replies 68 Views	August 28, 2018, 02:32:56 pm by laura savana
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 69 Views	September 06, 2018, 09:54:01 am by xiangjun
strange residue number after dssr --view option Started by shuxiang	2 Replies 138 Views	August 06, 2018, 05:40:26 pm by shuxiang
List only base pairs in output Started by Llewellyn	2 Replies 150 Views	July 26, 2018, 01:41:41 pm by Llewellyn
automatically count the number of nucleotides involved in RNA helices Started by elodiem	3 Replies 206 Views	July 27, 2018, 09:23:28 am by xiangjun
Analysis crashes: MD trajectory of abasic site in RNA Started by Marcel Heinz	10 Replies 208 Views	September 06, 2018, 01:48:00 pm by xiangjun
How to display RNA secondary structure with & in forna? Started by shuxiang	2 Replies 351 Views	May 15, 2018, 11:35:00 am by shuxiang
Water H-Bonding with surrounding residues Started by kanavkalra	3 Replies 352 Views	May 20, 2018, 06:21:41 pm by xiangjun
include non-cannonical base-pairing in DBN output? Started by jms89	3 Replies 367 Views	June 09, 2018, 07:43:19 pm by xiangjun
DSSR-enhanced visualization web server cannot display ribosome structures? Started by shuxiang	4 Replies 371 Views	May 17, 2018, 12:58:25 pm by shuxiang
Opinion about the DSSR performance compared with the new "CompAnnotate". Started by martingb	4 Replies 598 Views	April 10, 2018, 04:43:24 pm by martingb
discarded nucleotides in json output Started by ICdB	2 Replies 603 Views	March 08, 2018, 05:23:57 pm by ICdB
Centre of Mass Pseudodihedral Angle Started by hijibijbij	3 Replies 607 Views	April 03, 2018, 11:29:30 am by xiangjun
human telomeric g quadruplex - base stacking energy Started by bciezah1	2 Replies 1323 Views	November 13, 2017, 08:58:12 am by bciezah1
Quantifying base stacking interactions Started by chubetty	1 Replies 1338 Views	August 17, 2017, 03:30:03 pm by xiangjun
running DSSR in windows Started by cokiest	3 Replies 1346 Views	December 12, 2017, 12:56:43 pm by cokiest
Chain names in DSSR JSON output for PDB Biological Assemblies Started by chemikeris	4 Replies 1419 Views	December 19, 2017, 01:30:02 pm by xiangjun
brackets in DNA-RNA pairing Started by ICdB	8 Replies 1489 Views	January 15, 2018, 01:17:15 pm by xiangjun

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