RNA structures (DSSR)

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DSSR-NAR paper Scripts and data files for reproducing results reported in the DSSR-NAR paper. Moderator: xiangjun	19 Posts 19 Topics	Last post by xiangjun in RNA cartoon-block repres... on July 24, 2015, 02:18:56 pm
GA pairs in RNA folding Topics related to the ACS Biochemistry paper on the structural context and spatial arrangements of G·A pairs	26 Posts 7 Topics	Last post by shuxiang in Figure 6. Molecular imag... on June 14, 2019, 03:59:21 pm
DSSR-Jmol integration Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures. Moderator: xiangjun	5 Posts 5 Topics	Last post by xiangjun in cover image on June 30, 2017, 01:56:36 pm
Web-DSSR A web-interface to DSSR for the analysis and annotation of RNA 3D structures Moderator: shuxiang	1 Posts 1 Topics	Last post by shuxiang in Web DSSR for dissecting ... on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 7300 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 7749 Views	October 31, 2013, 11:24:21 am by xiangjun
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 30 Views	June 21, 2019, 03:31:57 pm by shuxiang
Noncanonical base pair standards Started by m.bruist	1 Replies 140 Views	May 26, 2019, 12:26:33 pm by xiangjun
no nucleotide in some structures Started by shuxiang	2 Replies 392 Views	February 11, 2019, 11:41:21 am by shuxiang
Junction definition Started by lijun	4 Replies 396 Views	March 07, 2019, 02:23:01 pm by lijun
Using dssr to analyze PDB containing multiple frames Started by jimamoto	3 Replies 435 Views	March 08, 2019, 10:45:24 pm by xiangjun
Stems of junction structure have only one base pair Started by lijun	3 Replies 516 Views	January 16, 2019, 01:08:16 pm by xiangjun
Stacking parameters Started by spoblete	1 Replies 840 Views	December 27, 2018, 02:08:45 pm by xiangjun
DSSR Download and Installation Started by se3DNAcct	1 Replies 1163 Views	September 26, 2018, 06:48:51 pm by xiangjun
significance of character "P" Started by laura savana	2 Replies 1406 Views	August 28, 2018, 02:32:56 pm by laura savana
automatically count the number of nucleotides involved in RNA helices Started by elodiem	3 Replies 1425 Views	July 27, 2018, 09:23:28 am by xiangjun
List only base pairs in output Started by Llewellyn	2 Replies 1443 Views	July 26, 2018, 01:41:41 pm by Llewellyn
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 1455 Views	September 06, 2018, 09:54:01 am by xiangjun
strange residue number after dssr --view option Started by shuxiang	2 Replies 1482 Views	August 06, 2018, 05:40:26 pm by shuxiang
How to display RNA secondary structure with & in forna? Started by shuxiang	2 Replies 1489 Views	May 15, 2018, 11:35:00 am by shuxiang
Seeking help with DSSR (Base Pair and Stacking) Started by mahfuz	6 Replies 1584 Views	October 15, 2018, 12:29:15 pm by mahfuz
Water H-Bonding with surrounding residues Started by kanavkalra	3 Replies 1597 Views	May 20, 2018, 06:21:41 pm by xiangjun
discarded nucleotides in json output Started by ICdB	2 Replies 1630 Views	March 08, 2018, 05:23:57 pm by ICdB
DSSR-enhanced visualization web server cannot display ribosome structures? Started by shuxiang	4 Replies 1663 Views	May 17, 2018, 12:58:25 pm by shuxiang

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