RNA structures (DSSR)

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DSSR-NAR paper

Scripts and data files for reproducing results reported in the DSSR-NAR paper.

Moderator: xiangjun

19 Posts
19 Topics

Last post by xiangjun
in RNA cartoon-block repres...
on July 24, 2015, 02:18:56 pm

DSSR-Jmol integration

Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures.

Moderator: xiangjun

5 Posts
5 Topics

Last post by xiangjun
in cover image
on June 30, 2017, 01:56:36 pm

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Subject / Started by	Replies / Views	Last post
DSSR release history Started by xiangjun	0 Replies 33341 Views	October 31, 2013, 11:24:21 am by xiangjun
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 39851 Views	March 28, 2015, 12:42:38 pm by xiangjun
How the length of the sequence depends on _pdbx_unobs_or_zero_occ_atoms ??? Started by sk	2 Replies 1090 Views	September 06, 2024, 10:23:46 am by sk
force DSSR to treat the loop region as base-pairs Started by amirtaghavi	1 Replies 11127 Views	April 11, 2021, 05:50:17 pm by xiangjun
A pair is absent in dot-bracket notation ? Started by sk	4 Replies 11355 Views	September 05, 2024, 11:10:22 pm by xiangjun
RNA Journal Covers Started by cllawson	1 Replies 11553 Views	July 28, 2020, 03:37:38 pm by xiangjun
DSSR eta-base theta-base Started by cllawson	1 Replies 11783 Views	January 09, 2021, 07:19:44 pm by xiangjun
Figure 3. Scatter plots of the rigid-body components—shear, stretch, and opening Started by shuxiang	1 Replies 11789 Views	June 10, 2019, 01:24:06 pm by shuxiang
Figure 4. Succession of configurations illustrating the rigid-body motions Started by shuxiang	1 Replies 11812 Views	June 14, 2019, 03:11:58 pm by shuxiang
Materials related to the DSSR ACS Biochemistry article on G.A pairs Started by xiangjun	0 Replies 12095 Views	June 07, 2019, 02:48:29 pm by xiangjun
Do you provide DSSR 1.* downloads ? Started by persalteas	1 Replies 12217 Views	September 15, 2020, 09:39:25 am by xiangjun
x3dna-dssr -h no response Started by rvandamm	1 Replies 12277 Views	January 15, 2021, 09:53:57 pm by xiangjun
Query in 3DNA-DSSR output vs W3DNA output Started by sankaran	1 Replies 12370 Views	February 28, 2021, 10:22:26 am by xiangjun
nt_ids for residues i+1 and i-1 Started by brinda.vallat	3 Replies 12381 Views	February 24, 2021, 11:57:13 am by xiangjun
torsion angle distribution in C2'-endo RNA Started by zhhxu	4 Replies 12560 Views	June 29, 2020, 10:56:30 am by zhhxu
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 12633 Views	June 21, 2019, 03:31:57 pm by shuxiang
wDSSR showing invalid ID on a valid PDB ID Started by kalra.utkarsh	1 Replies 12643 Views	November 07, 2020, 09:31:40 am by xiangjun
SASA of nucleobases Started by Mohit Chawla	3 Replies 12648 Views	February 06, 2020, 04:56:32 pm by xiangjun
3DNA-DSSR Started by aathithya	3 Replies 12723 Views	February 19, 2021, 12:26:56 am by xiangjun
Figure 5. Molecular images illustrating hydrogen bonds (dashed lines) shared Started by shuxiang	1 Replies 12872 Views	June 14, 2019, 03:55:57 pm by shuxiang

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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