RNA structures (DSSR)

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Subject / Started by	Replies / Views	Last post
strange residue number after dssr --view option Started by shuxiang	2 Replies 5688 Views	August 06, 2018, 05:40:26 pm by shuxiang
FRABASE Started by lvelve0901	2 Replies 7068 Views	November 13, 2017, 10:06:40 am by lvelve0901
dssr issue (for modified pdb files) Started by auffinger	2 Replies 8272 Views	September 04, 2013, 09:16:51 am by auffinger
human telomeric g quadruplex - base stacking energy Started by bciezah1	2 Replies 7352 Views	November 13, 2017, 08:58:12 am by bciezah1
Can DSSR detect stacking interaction between ligand and nucleic acid Started by lvelve0901	2 Replies 6797 Views	November 17, 2017, 09:15:08 am by xiangjun
List only base pairs in output Started by Llewellyn	2 Replies 6482 Views	July 26, 2018, 01:41:41 pm by Llewellyn
composite DNA template length Started by miaobeibei925	2 Replies 3803 Views	February 11, 2021, 04:46:42 pm by xiangjun
How 3DNA-DSSR define RNA junctions? Started by hume	2 Replies 6334 Views	January 07, 2015, 11:54:33 am by hume
DSSR output - Base pair characteristics Started by jctoledo	2 Replies 9499 Views	March 26, 2013, 01:56:53 pm by jctoledo
Removing some nucleotides and fixing/reducing the loop in my RNA structure Started by Sruthi0412	2 Replies 7178 Views	July 20, 2021, 06:21:06 am by Sruthi0412
strange base name Started by Trista	2 Replies 6599 Views	December 15, 2016, 10:07:03 pm by Trista
Rendering Images of RNA Started by Pablo Ricardo Arantes	2 Replies 9326 Views	May 01, 2013, 10:04:33 pm by xiangjun
How to get DSSR up and running? Started by Ying	2 Replies 8406 Views	September 15, 2021, 01:41:25 pm by Ying
no nucleotide in some structures Started by shuxiang	2 Replies 6409 Views	February 11, 2019, 11:41:21 am by shuxiang
Questions of calculations of inter-base angles Started by wangshsh	2 Replies 5592 Views	February 25, 2017, 01:35:45 am by wangshsh
Further questions about inter-base angle calculations Started by wangshsh	2 Replies 7226 Views	February 27, 2017, 10:38:39 am by xiangjun
force DSSR to treat the loop region as base-pairs Started by amirtaghavi	1 Replies 2483 Views	April 11, 2021, 05:50:17 pm by xiangjun
Query in 3DNA-DSSR output vs W3DNA output Started by sankaran	1 Replies 3377 Views	February 28, 2021, 10:22:26 am by xiangjun
Lost info in CT output Started by Sylverlin	1 Replies 7883 Views	November 02, 2014, 10:50:44 am by xiangjun
negative stretch and opening in RNA pairs Started by acolasanti	1 Replies 8943 Views	March 07, 2014, 01:30:45 pm by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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