RNA structures (DSSR)

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DSSR-NAR paper

Scripts and data files for reproducing results reported in the DSSR-NAR paper.

Moderator: xiangjun

19 Posts
19 Topics

Last post by xiangjun
in RNA cartoon-block repres...
on July 24, 2015, 02:18:56 pm

DSSR-Jmol integration

Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures.

Moderator: xiangjun

5 Posts
5 Topics

Last post by xiangjun
in cover image
on June 30, 2017, 01:56:36 pm

Web-DSSR

A web-interface to DSSR for the analysis and annotation of RNA 3D structures

Moderator: shuxiang

1 Posts
1 Topics

Last post by shuxiang
in Web DSSR for dissecting ...
on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 6905 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 7419 Views	October 31, 2013, 11:24:21 am by xiangjun
Using dssr to analyze PDB containing multiple frames Started by jimamoto	3 Replies 88 Views	March 08, 2019, 10:45:24 pm by xiangjun
Junction definition Started by lijun	4 Replies 103 Views	March 07, 2019, 02:23:01 pm by lijun
no nucleotide in some structures Started by shuxiang	2 Replies 159 Views	February 11, 2019, 11:41:21 am by shuxiang
Stems of junction structure have only one base pair Started by lijun	3 Replies 252 Views	January 16, 2019, 01:08:16 pm by xiangjun
Stacking parameters Started by spoblete	1 Replies 605 Views	December 27, 2018, 02:08:45 pm by xiangjun
Non canonical RNA pairs in bpseq format Started by jaswinder.singh	1 Replies 6062 Views	December 01, 2018, 09:59:40 am by xiangjun
Web 3DNA Error Started by Pierred	3 Replies 5116 Views	October 18, 2018, 01:43:45 pm by Pierred
Seeking help with DSSR (Base Pair and Stacking) Started by mahfuz	6 Replies 1219 Views	October 15, 2018, 12:29:15 pm by mahfuz
DSSR Download and Installation Started by se3DNAcct	1 Replies 923 Views	September 26, 2018, 06:48:51 pm by xiangjun
Analysis crashes: MD trajectory of abasic site in RNA Started by Marcel Heinz	10 Replies 1921 Views	September 06, 2018, 01:48:00 pm by xiangjun
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 1149 Views	September 06, 2018, 09:54:01 am by xiangjun
significance of character "P" Started by laura savana	2 Replies 1170 Views	August 28, 2018, 02:32:56 pm by laura savana
strange residue number after dssr --view option Started by shuxiang	2 Replies 1247 Views	August 06, 2018, 05:40:26 pm by shuxiang
automatically count the number of nucleotides involved in RNA helices Started by elodiem	3 Replies 1174 Views	July 27, 2018, 09:23:28 am by xiangjun
List only base pairs in output Started by Llewellyn	2 Replies 1184 Views	July 26, 2018, 01:41:41 pm by Llewellyn
include non-cannonical base-pairing in DBN output? Started by jms89	3 Replies 1414 Views	June 09, 2018, 07:43:19 pm by xiangjun
Water H-Bonding with surrounding residues Started by kanavkalra	3 Replies 1341 Views	May 20, 2018, 06:21:41 pm by xiangjun
DSSR-enhanced visualization web server cannot display ribosome structures? Started by shuxiang	4 Replies 1394 Views	May 17, 2018, 12:58:25 pm by shuxiang

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