RNA structures (DSSR)

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DSSR-NAR paper

Scripts and data files for reproducing results reported in the DSSR-NAR paper.

Moderator: xiangjun

19 Posts
19 Topics

Last post by xiangjun
in RNA cartoon-block repres...
on July 24, 2015, 02:18:56 pm

DSSR-Jmol integration

Topics related to the DSSR-Jmol integration for enhanced visualization of nucleic acid structures.

Moderator: xiangjun

5 Posts
5 Topics

Last post by xiangjun
in cover image
on June 30, 2017, 01:56:36 pm

Web-DSSR

A web-interface to DSSR for the analysis and annotation of RNA 3D structures

Moderator: shuxiang

1 Posts
1 Topics

Last post by shuxiang
in Web DSSR for dissecting ...
on July 29, 2018, 02:16:30 pm

Subject / Started by	Replies / Views	Last post
DSSR: Dissecting the Spatial Structure of RNA Started by xiangjun	0 Replies 5676 Views	March 28, 2015, 12:42:38 pm by xiangjun
DSSR release history Started by xiangjun	0 Replies 6169 Views	October 31, 2013, 11:24:21 am by xiangjun
Analysis crashes: MD trajectory of abasic site in RNA Started by Marcel Heinz	10 Replies 204 Views	September 06, 2018, 01:48:00 pm by xiangjun
Minimal required cif keys (cif files created with biopython not working) Started by Bernhard10	5 Replies 68 Views	September 06, 2018, 09:54:01 am by xiangjun
significance of character "P" Started by laura savana	2 Replies 68 Views	August 28, 2018, 02:32:56 pm by laura savana
strange residue number after dssr --view option Started by shuxiang	2 Replies 136 Views	August 06, 2018, 05:40:26 pm by shuxiang
automatically count the number of nucleotides involved in RNA helices Started by elodiem	3 Replies 205 Views	July 27, 2018, 09:23:28 am by xiangjun
List only base pairs in output Started by Llewellyn	2 Replies 146 Views	July 26, 2018, 01:41:41 pm by Llewellyn
include non-cannonical base-pairing in DBN output? Started by jms89	3 Replies 365 Views	June 09, 2018, 07:43:19 pm by xiangjun
Water H-Bonding with surrounding residues Started by kanavkalra	3 Replies 347 Views	May 20, 2018, 06:21:41 pm by xiangjun
DSSR-enhanced visualization web server cannot display ribosome structures? Started by shuxiang	4 Replies 361 Views	May 17, 2018, 12:58:25 pm by shuxiang
How to display RNA secondary structure with & in forna? Started by shuxiang	2 Replies 349 Views	May 15, 2018, 11:35:00 am by shuxiang
Opinion about the DSSR performance compared with the new "CompAnnotate". Started by martingb	4 Replies 593 Views	April 10, 2018, 04:43:24 pm by martingb
Centre of Mass Pseudodihedral Angle Started by hijibijbij	3 Replies 604 Views	April 03, 2018, 11:29:30 am by xiangjun
Turn of Auxiliary File Creation (x3dna-dssr) Started by saladi	8 Replies 2689 Views	March 21, 2018, 11:53:35 pm by xiangjun
discarded nucleotides in json output Started by ICdB	2 Replies 602 Views	March 08, 2018, 05:23:57 pm by ICdB
brackets in DNA-RNA pairing Started by ICdB	8 Replies 1486 Views	January 15, 2018, 01:17:15 pm by xiangjun
Chain names in DSSR JSON output for PDB Biological Assemblies Started by chemikeris	4 Replies 1417 Views	December 19, 2017, 01:30:02 pm by xiangjun
running DSSR in windows Started by cokiest	3 Replies 1346 Views	December 12, 2017, 12:56:43 pm by cokiest
Can DSSR detect stacking interaction between ligand and nucleic acid Started by lvelve0901	2 Replies 1522 Views	November 17, 2017, 09:15:08 am by xiangjun

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