76
RNA structures (DSSR) / Re: Creation of customized structures using DSSR
« on: October 12, 2023, 08:18:44 am »
Hi,
Thanks for your using 3DNA, and your inquiries about DSSR Pro.
It is directly relevant to the Forum. You are very welcome to post this question, and any more you may have.
No, at least for now, even though it is not clear to me what exactly are the 9 torsional angles you refer to. DSSR employs 6 rigid-body parameters to quantity the relative spatial geometry between two bases (or base pairs) and uses them to build 3D models with approximate backbones. I have long been interested in adding more modeling features to DSSR ...
Best regards,
Xiang-Jun
Thanks for your using 3DNA, and your inquiries about DSSR Pro.
Quote
I apologize if this question is irrelevant for the forum, I wanted to confirm if DSSR Pro could satisfy our requirements before buying the license since the Pro version of the manual is not available.
It is directly relevant to the Forum. You are very welcome to post this question, and any more you may have.
Quote
We have an RNA sequence, and the 9 torsional angles (calculated by 3DNA v2.4) for each residue. Would it be possible to reconstruct the full-atom 3D structure of the RNA using DSSR Pro's rebuild program from just these two pieces of information - the sequence and the 9 torsional angles?
No, at least for now, even though it is not clear to me what exactly are the 9 torsional angles you refer to. DSSR employs 6 rigid-body parameters to quantity the relative spatial geometry between two bases (or base pairs) and uses them to build 3D models with approximate backbones. I have long been interested in adding more modeling features to DSSR ...
Best regards,
Xiang-Jun