Topics

1

w3DNA -- web interface to 3DNA / changing secondary structure to tertiary structure of ssDNA

« on: March 22, 2012, 04:09:27 am »

Hi Xiang Jun,

I have a ssDNA sequence from 5' - 3' (TAATACGACTCACTATAGGGAATCCGTCGACGAATTCCCTATAGTGAGTCGTATTA). I have predicted the secondary structure using http://mfold.rna.albany.edu/?q=mfold/DNA-Folding-Form. I have set the ionic condition of Na⁺ as 0.1M and the folding temperature as 30 degree celsius. Here is the predicted secondary structure attached.

How do I change this secondary structure into tertiary structure using 3DNA web server? Or is there any way that I can do to get this tertiary structure from the sequence above? Thanks in advance

Kumutha

2

General discussions (Q&As) / 3DNA download

« on: March 21, 2012, 01:15:51 am »

Hi,

Where can I get a latest downloadable software tutorial?

3

General discussions (Q&As) / Problems with installing 3DNA on MinGW/MSYS

« on: March 20, 2012, 09:59:53 pm »

Hi,

 Is it possible to install 3DNA software on windows XP? If so, how do I do it?  should I install MinGW or Cygwin?