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MD simulations
Topics
[1] generate DNA pdb file for Gromacs
[3] Superimpose representative cluster of a RNA strand after simulation
[4] Unnatural base pair helical parameters
[5] Failed Downloading MD Ruby Scripts of 3DNA
[6] Filter frayed ends or broken H bonds
[7] do_x3dna as a plugin for VMD and update in dnaMD
[8] Analysis of helical parameter of DNA with unnatural
[9] Analysis of major groove and minor groove
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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.