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MD simulations
Topics
[1] 3dna.pl - A Perl Script for Parsing 3DNA Output
[2] the sign of minor or major groove width
[3] MMTSB Tool Set for CHARMM/NAMD generated trajectory DCD files
[4] Ruby scripts for the analysis of MD simulation trajectories
[5] A modified 3DNA parser for MD trajectory analysis
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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.