Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Author Topic: 3dna tutorial  (Read 18670 times)

Offline sima

  • with-posts
  • *
  • Posts: 6
    • View Profile
3dna tutorial
« on: May 27, 2019, 12:15:48 pm »
hi dr.xiangjun
im a new user of 3dna software
Sorry to take your time
I'm going to design a single-stranded DNA structure for designing the switches that work with the pH.
Do you have a file for full software training? Especially for the design of clamp switches.
I want to fully understand rebuild and mutate analysis of this software.
Does this software give us the possibility of protonizing the structure?
thanks for your help

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1650
    • View Profile
    • 3DNA homepage
Re: 3dna tutorial
« Reply #1 on: May 27, 2019, 12:19:55 pm »
Quote
Do you have a file for full software training?

Check contents in $X3DNA/docs, especially the README file.

Quote
Especially for the design of clamp switches.

No.

Quote
I want to fully understand rebuild and mutate analysis of this software.
Does this software give us the possibility of protonizing the structure?

No.

Xiang-Jun
« Last Edit: June 12, 2019, 12:30:37 am by xiangjun »

 

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University