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Topics - luka86

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RNA structures (DSSR) / 2D DNA structure
« on: February 01, 2024, 09:57:09 am »
Dear Dr. Xiang-Jun,
I am working on single stranded DNA aptamers and would like to be able to retrieve the 2D DNA structure of single-stranded DNA based on the PDB file. I would like to obtain the output in .ct or dot-bracket format, the same format as it is created by Mfold from the sequence. Is this feature already included in some of the tools?
Thank you in advance,
Best regards, Luka

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University