Messages

1

General discussions (Q&As) / Re: phenanthrene base

« on: November 07, 2014, 04:30:56 am »

I will check NAB. Thank you very much!

2

General discussions (Q&As) / Re: phenanthrene base

« on: November 06, 2014, 04:07:33 am »

For example in this structure here: http://pdb.org/pdb/explore/explore.do?structureId=1S88# and in this image: http://onlinelibrary.wiley.com/store/10.1002/chem.201301983/asset/image_m/mcontent.gif?v=1&s=fd3fa1ad5040d701d98b508b9f78f00ff177af0d There are bases with 3 rings. The pdb id is 2DM.

3

General discussions (Q&As) / phenanthrene base

« on: November 05, 2014, 10:43:22 am »

Dear Xiangjun,

Is it possible with 3DNA to build a DNA that has phenanthrene bases?

Thanks in advance,
Alex

4

General discussions (Q&As) / Re: DNA extending

« on: September 08, 2014, 05:06:43 am »

Dear Xiangjun,

Thank you very much for your answer! Using your instructions above, I build something very close to the DNA that I wanted!

Best regards,
Alex

5

General discussions (Q&As) / Re: DNA extending

« on: September 04, 2014, 11:35:37 am »

Dear Xiangjun,

I am a new 3DNA user and I would like to ask you a question about DNA extending. I have a DNA with a missing part in the middle (PDB attached) and I would like to reconstruct this part (with AT pairs for example) by extending the other 2 parts. Is it possible? How could I also calculate how many interval pairs with a simple B-DNA conformation I need?

Best regards,
Alex