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Subject / Started by	Replies / Views	Last post
Rebuild with backbone from single-stranded .par file Started by nicalleb	0 Replies 2123 Views	March 21, 2022, 07:39:35 am by nicalleb
relationship between the two base-pair coordinate frames Started by zhao	0 Replies 2143 Views	May 08, 2022, 06:36:38 am by zhao
Calculate torsion angles of the DNA, without taking into account the bases Started by Andrea R	1 Replies 2704 Views	September 10, 2022, 09:38:10 pm by xiangjun
build a DNA triangle for Gromacs Started by glx55483	1 Replies 2888 Views	April 17, 2018, 11:43:22 pm by xiangjun
runing x3dna for CG dna structure (without base-pairing information) Started by adolfo	3 Replies 2896 Views	January 23, 2020, 10:32:39 am by xiangjun
Eleongate RNA pdb structure Started by remba87	0 Replies 2994 Views	January 30, 2018, 05:58:24 am by remba87
installation error in MAC Started by dnalectronics	0 Replies 3003 Views	November 22, 2021, 02:16:43 pm by dnalectronics
Different shear etc. 3 DNA and Curves+ Started by ellify	1 Replies 3039 Views	September 11, 2019, 11:04:49 am by xiangjun
MOVED: How to detect very distorted base pair? Started by xiangjun	0 Replies 3205 Views	January 20, 2020, 11:42:18 pm by xiangjun
Generating PDB file Started by Shreya Ghosh	1 Replies 3337 Views	April 18, 2020, 08:53:55 pm by xiangjun
How to calculate DNA bending angles in protein/DNA complex Started by miriam.llamas	1 Replies 3387 Views	March 22, 2018, 12:03:51 am by xiangjun
MOVED: Color each block nucleotide at each locations Started by xiangjun	0 Replies 3458 Views	May 26, 2021, 04:16:46 pm by xiangjun
H-bonding information Started by sgu0752	1 Replies 3472 Views	June 11, 2019, 04:17:39 pm by xiangjun
MOVED: Stacking interactions in G-quadruplexes Started by xiangjun	0 Replies 3475 Views	May 21, 2021, 11:48:32 am by xiangjun
MOVED: Standard Values for A-, B-, C-DNA on w3DNA Started by xiangjun	0 Replies 3496 Views	April 23, 2020, 09:34:21 am by xiangjun
Shift and Tilt values of Z-DNA : 3DNA and Curves+ Started by mandar	3 Replies 3515 Views	May 13, 2018, 10:18:16 pm by mandar
Uncalculated step-parameters angles with ANALYZE Started by ns_rodriguezm	1 Replies 3562 Views	September 13, 2016, 05:19:21 pm by xiangjun
How to Run Comparisons between Sequences of Similar Length? Started by HenryB	3 Replies 3607 Views	December 24, 2019, 04:12:52 pm by xiangjun
MOVED: Circular DNA parameters Started by xiangjun	0 Replies 3627 Views	February 18, 2021, 11:07:07 am by xiangjun
Tolerance of mutate_bases Started by panosk	1 Replies 3729 Views	November 05, 2016, 01:10:01 pm by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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