mutate_bases error

[Charu]

Hi as I try to mutate bases in 3DFV using the command mutate_bases 'c=Y, s=14, m=DC' 3DFV.pdb 3DFV_mut.pdb, it shows a message:
"Out of 3 qualified entries

Y: 214783647_: [@@@] ===> [@@@.@] identical residue for mutation
@:..14_: [@@@] ===> identical residue for mutation
@:214783647_: [@@@] ===> [DC.@] required chainID/resnm/mutation not specified"

But I had mutated bases earlier using the same command. Could you please help me out?

[xiangjun]

mutate_bases 'c=Y, s=14, m=DC' 3DFV.pdb 3DFV_mut.pdb

Change comma to space, as below:

Code: [Select]

mutate_bases 'c=Y s=14 m=DC' 3DFV.pdb 3DFV_mut.pdb
Comma or semicolon is used to separate multiple mutations. I am updating command line help message to make this point clearer.

Xiang-Jun