Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Author Topic: w3dna server update schedule?  (Read 27991 times)

Offline cllawson

  • non-commercial
  • with-posts
  • *
  • Posts: 25
    • View Profile
w3dna server update schedule?
« on: August 08, 2019, 12:12:22 pm »
Hi Xiang-Jun,

I notice that ids for more recently released entries yield the following message from the w3DNA server: Empty or invalid ID, please type in a valid one.  (example: http://www.rcsb.org/structure/6I84).
So I'm wondering:
(1) how often the server is updated?
(2) since you can already analyze uploaded structures on the fly have you thought about enabling option to pull/analyze coordinates for newer PDB entries?

Thanks, Cathy

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1646
    • View Profile
    • 3DNA homepage
Re: w3dna server update schedule?
« Reply #1 on: August 08, 2019, 12:28:47 pm »
Hi Cathy,

Good catch!

It is in the to-do list to automatically handle newer PDB entries than the initially processed dataset dated March 6, 2019 (reported in the Web 3DNA 2.0 paper). I chatted with Shuxiang about this feature a while ago. Hopefully, the server will be updated in the near future with the functionality.

Best regards,

Xiang-Jun

Offline cllawson

  • non-commercial
  • with-posts
  • *
  • Posts: 25
    • View Profile
Re: w3dna server update schedule?
« Reply #2 on: August 09, 2019, 07:42:31 am »
Thanks -- that is good news!

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.