Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Download/Licensing · {Video Overview of DSSR}

Author Topic: error in rebuild command  (Read 1212 times)

Offline amirtaghavi

  • with-posts
  • *
  • Posts: 10
    • View Profile
error in rebuild command
« on: May 05, 2021, 04:27:42 pm »
Hello Dr. Xiangjun,

following the example in "np_recipes/R2_roll_bending" I am trying to use the rebuild command to create an image like those provided (Figure3_r300.png) for my RNA systems which are highly bent.

After preparing the input file to execute the following commnad:
 rebuild roll_a.dat roll_a_raw.alc
I receive an error message: unknown residue slide

so I just ran the same command on the example file provided in the "R2_roll_bending" dir (roll_a.dat) and I get the same error message.

I was wondering if I could use your help.

Thanks in forward.

Best,
Amir

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1611
    • View Profile
    • 3DNA homepage
Re: error in rebuild command
« Reply #1 on: May 05, 2021, 04:40:38 pm »
Hi Amir,

3DNA has been completely superseded by DSSR. Due to a lack of funding support, I can no longer devote any effort on 3DNA.

DSSR Pro is the only software product I support right now. A video overview of DSSR is available at: http://docs.x3dna.org/dssr-overview/

Best regards,

Xiang-Jun

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.