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RNA structures (DSSR) / Extending DNA in protein-DNA complex - issue with final steps
« on: February 03, 2021, 02:39:31 pm »
Hello all, and thank you for this easy to use software!
I have extended my DNA duplex using the instructions in the forum post http://forum.x3dna.org/users-contributions/build-dna-bulges-and-extend-dna-duplex-at-both-terminals-via-3dna/msg921. This was very helpful. I can provide my code if necessary.
I am having an issue when I visualize, though. I followed the steps in the post and repeated the steps to ensure I did them correctly, but it seems that there are some breaks in the backbone structure. I am wondering if there is anyway to fix this using 3DNA or if anyone has ran into this problem before. I've attached an image of what I mean.
Please let me know if there is anything I can provide.
I have extended my DNA duplex using the instructions in the forum post http://forum.x3dna.org/users-contributions/build-dna-bulges-and-extend-dna-duplex-at-both-terminals-via-3dna/msg921. This was very helpful. I can provide my code if necessary.
I am having an issue when I visualize, though. I followed the steps in the post and repeated the steps to ensure I did them correctly, but it seems that there are some breaks in the backbone structure. I am wondering if there is anyway to fix this using 3DNA or if anyone has ran into this problem before. I've attached an image of what I mean.
Please let me know if there is anything I can provide.