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Feature requests / Rebuild DNA structures based on 28 parameters
« on: October 28, 2017, 08:56:54 am »
Respected Xiang Sir,
I have calculated 28 structural parameter values on the basis of crystal structures of DNA, including 5 base pair axis parameter (X Disp., Y Disp., Inclination, Tip and Ax-Bend), 6 Intra base pair parameter (Shear, Stretch, Stagger, Buckle, Propel and Opening), 8 Inter base pair parameter (Shift, Slide, Rise, Tilt, Roll, Twist, H-Rise and H-Twist) and 9 backbone parameter (Alpha, Beta, Gamma, Delta, Epsilon, Zeta, Chi, Phase and Amplitude).
I want to rebuild DNA structure on the basis of these all 28 parameters to get an average DNA structure according to my calculated values. I tried to use rebuild function but I am only able to use 12 parameters at a time through .par file. Further, in this project, I want to give some extra attention on backbone angles and thus want to change accordingly.
May you please guide me that how can I change all the 28 parameter value for a DNA structure at once or any step by step process to achieve the same.
Thank You!!
Your Sincerely
Akhilesh Mishra
Research Scholar,
c/o Prof B. Jayaram,
SCFBio, IIT Delhi, INDIA.
I have calculated 28 structural parameter values on the basis of crystal structures of DNA, including 5 base pair axis parameter (X Disp., Y Disp., Inclination, Tip and Ax-Bend), 6 Intra base pair parameter (Shear, Stretch, Stagger, Buckle, Propel and Opening), 8 Inter base pair parameter (Shift, Slide, Rise, Tilt, Roll, Twist, H-Rise and H-Twist) and 9 backbone parameter (Alpha, Beta, Gamma, Delta, Epsilon, Zeta, Chi, Phase and Amplitude).
I want to rebuild DNA structure on the basis of these all 28 parameters to get an average DNA structure according to my calculated values. I tried to use rebuild function but I am only able to use 12 parameters at a time through .par file. Further, in this project, I want to give some extra attention on backbone angles and thus want to change accordingly.
May you please guide me that how can I change all the 28 parameter value for a DNA structure at once or any step by step process to achieve the same.
Thank You!!
Your Sincerely
Akhilesh Mishra
Research Scholar,
c/o Prof B. Jayaram,
SCFBio, IIT Delhi, INDIA.