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Messages - AlanWhite

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Where do I enter a nucleotide base pair sequence? How do I enter a nucleotide base pair sequence? Like this: ATCGAAGGTC? or like this: A/T/T/C/G/? May I please have a link?   

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General discussions (Q&As) / Re: RAS Oncogenes In Three Dimensions?
« on: November 25, 2016, 09:17:41 pm »
Thanks for your comments. I just downloaded and installed CHIMERA from the University of California in San Francisco. CHIMERA might be the answer to my questions and the solution to my problems. And it's Freeware!

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General discussions (Q&As) / Re: RAS Oncogenes In Three Dimensions?
« on: November 25, 2016, 04:37:39 pm »
I tried the Protein Data Bank. Their images are derived for genes in oddball organisms and under strange circumstances. I want to image the Ras oncogenes one at a time. Make changes in base pair composition and then compare the images (pre-malignant - post-malignant) against one another. Do you have an opinion about the software at this website:
http://bioinf.uni-greifswald.de/augustus/

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General discussions (Q&As) / RAS Oncogenes In Three Dimensions?
« on: November 25, 2016, 02:59:10 pm »
I can find nucleotide base pair sequences for all the variants of the RAS Oncogene on the COSMIC Tumor Database website. What I can't find is three dimensional images of the RAS Oncogenes based on their separate and distinct nucleotide base pair sequences.

Is there a website where I might copy and paste a RAS gene base pair sequence into a window and be rewarded with a three dimensional image of the gene?   

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.