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Topics - Mohit Chawla

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1
Hi,
May I know if we can calculate the possible H-bonding pairing between the RNA nucleobases and amino acids in RNA-Protein complexes using the current version of SNAP?
Thanks
Mohit

2
RNA structures (DSSR) / SASA of nucleobases
« on: February 06, 2020, 01:35:47 am »
Hello,
May I know if we have the option in DSSR from which we can calculate the solvent accessible surface area of individual nucleobases of RNA structures?
Thanks
Mohit

3
RNA structures (DSSR) / atom-base capping
« on: December 11, 2016, 09:43:12 am »
Hi,
In the atom-base capping interactions, is it possible to also search for oxygen(water) to base contacts. For instance, in PDB id: 3d0u, HOH 213 makes a capping contact with G77, which we can not detect in the current version of dssr or may be I am missing with some option. Kindly suggest.
Thanks,
Mohit

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The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.