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General discussions (Q&As) / DNA Structure prediction with a heteroatom !
« on: October 10, 2010, 12:49:36 pm »
Let me introduce myself as Muthukumaran doing my Masters in Indian Institute of Technology.
I'm currenlty interested to predict the 3 dimensional structure of double stranded DNA (30 mer). I
found your software 3DNA. Quite impressive. But, I'm interested to build the 3D structure of the
DNA with a heteroatom which is a dye in my case. Can 3DNA be used to accomplish
the task ? We have a NMR structure of the DNA with the dye but thats 20 mer. Is there a way to
cut n paste the dye to the predicted 30 mer from the NMR using any tool ? Thank you
I'm currenlty interested to predict the 3 dimensional structure of double stranded DNA (30 mer). I
found your software 3DNA. Quite impressive. But, I'm interested to build the 3D structure of the
DNA with a heteroatom which is a dye in my case. Can 3DNA be used to accomplish
the task ? We have a NMR structure of the DNA with the dye but thats 20 mer. Is there a way to
cut n paste the dye to the predicted 30 mer from the NMR using any tool ? Thank you