Topics

1

RNA structures (DSSR) / DSSR Basic Licence Application: Seeking Status Update and Assistance

« on: February 16, 2024, 03:34:35 am »

Dear Xiangjun,

I hope this message finds you well. I'm writing to follow up on my recent application for the DSSR Basic Licence,  which was submitted by my supervisor(Lijun Quan) on 9th February, . As of now, I haven't received any confirmation or updates regarding the status of my application. Could you kindly provide me with some information on the next steps or any additional actions I might need to take to facilitate the process?

Thank you very much for your attention and assistance. I truly appreciate your help in this matter.

With best regards
Junkai

2

RNA structures (DSSR) / How does 3dna-dssr convert the atomic coordinates from PDB files into its output

« on: February 01, 2024, 07:21:19 am »

Hi Xiangjun,

I encountered an issue while analyzing RNA structures using the 3dna-dssr program: I noticed that the XYZ coordinates of atoms such as base C5' in the output results are not consistent with those in the PDB file, indicating that some transformation has been applied. I found that there seems to be a relative coordinate system between base pairs in the output file, and I attempted to use it for conversion, but the results did not meet my expectations. Could you please clarify how the coordinates in the PDB file are transformed into the format used in the program's output?