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Messages - miaobeibei925

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RNA structures (DSSR) / composite DNA template length
« on: January 21, 2021, 04:07:02 pm »
Dear Xiangjun,

I am trying to use the composite function on w3DNA 2.0 to generate a DNA-protein complex with the 1KX5 pdb.
The binding information page shows the DNA Template length is 146bp. However, the length of the 1kx5 DNA is 147bps. I downloaded the resulting composite pdb file and the DNA sequence in the composite model is different from that I entered. (DNA chain A residues 165 to 185 are different).

What can I do to change the DNA in this composite model to the DNA I entered?

Thank you

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The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.