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Messages - emmanir

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SCHNAaP/SCHNArP / backbone utility program
« on: January 05, 2010, 02:29:22 pm »
I was very happy to be able to use SCHNArP for my visualization purposes of DNA/nanoparticle interaction.
The 1997 publication on SCHNArP mentions that there is a utility that "traces the path of the backbone by connecting the C1' or RN9/YN1 atoms in the atomic models and the sugar atoms in the schematic models."
I cannot locate that utility program in the SCHNAaP/SCHNArP package.
Also, are there source codes available that provide atomistic coordinates of the backbone sugar/phosphate atoms between 2 existing bases?

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The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.