| slide.csv |
3041 |
Ruby scripts for the analysis of MD simulation trajectories |
January 19, 2011, 12:11:44 am |
| propeller.tsv |
3063 |
Ruby scripts for the analysis of MD simulation trajectories |
January 19, 2011, 12:11:44 am |
| x3dna_md.out |
3009 |
Ruby scripts for the analysis of MD simulation trajectories |
January 19, 2011, 12:11:44 am |
| fiber31_Hoogsteen.pdb |
2551 |
Re: building a parallel stranded DNA |
September 07, 2011, 12:42:16 pm |
| buckle.tsv |
2655 |
Re: H-bonding information in MD analysis output |
September 30, 2011, 10:17:44 am |
| hbond.tsv |
2626 |
Re: H-bonding information in MD analysis output |
September 30, 2011, 10:17:44 am |
| K19.png |
3416 |
Re: PNA-DNA duplex study using 3DNA |
November 26, 2011, 10:06:26 am |
| no1014-missing-bp.png |
3564 |
Re: Problem of finding all base pairs in distorted DNA structure using 3DNA |
January 05, 2012, 06:21:52 pm |
| EnergyPDNA.C |
3114 |
Re: deformation energy calculation program |
January 07, 2012, 11:49:30 pm |
| EnergyParams.h |
3040 |
Re: deformation energy calculation program |
January 07, 2012, 11:49:30 pm |
| normal_10ns.out |
2683 |
Re: Interpretation of Analysis data from 3DNA |
February 27, 2012, 05:38:36 pm |
| modified.out |
2671 |
Re: Interpretation of Analysis data from 3DNA |
February 27, 2012, 05:38:36 pm |
| AAACCCAAA-three.pdb |
3092 |
Re: haddock compatible pdb |
March 05, 2012, 11:43:20 am |
| AAACCCAAA-three-connect.pdb |
3118 |
Re: haddock compatible pdb |
March 05, 2012, 11:43:20 am |
| problem_str.png |
3890 |
Re: Analysis of PDB file |
April 07, 2012, 09:21:16 am |
| 1aju-m5-frag.png |
3745 |
Re: Helices and Isolates in output of find_pair |
July 13, 2012, 05:28:10 pm |
| 1z58_helix_336-338_346-348.png |
3780 |
Re: Helices and Isolates in output of find_pair |
July 15, 2012, 09:36:07 am |
| hairpin-loop-question.png |
3617 |
Re: Question on hairpin-loop in PDB entry 3uzn |
July 20, 2012, 09:54:50 am |
| oct.png |
4190 |
How to identify triplets, quadruplets and higher-order base associations |
August 16, 2012, 11:48:16 pm |
| A-tetrad.png |
4184 |
How to identify triplets, quadruplets and higher-order base associations |
August 16, 2012, 11:48:16 pm |
| G-tetrad.png |
4153 |
How to identify triplets, quadruplets and higher-order base associations |
August 16, 2012, 11:48:16 pm |
| zph_zp.png |
4677 |
Re: Datasets and scripts for reproducing Figure 5 of the 3DNA NAR03 paper |
September 07, 2012, 02:15:17 pm |
| incl_xdsp.png |
4664 |
Re: Datasets and scripts for reproducing Figure 5 of the 3DNA NAR03 paper |
September 07, 2012, 02:15:17 pm |
| roll_slide.png |
4731 |
Re: Datasets and scripts for reproducing Figure 5 of the 3DNA NAR03 paper |
September 07, 2012, 02:15:17 pm |
| A-base-pair.dat |
2763 |
Data files for Table 3 of the standard base-reference frame article |
September 18, 2012, 10:32:15 pm |
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