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RNA structures (DSSR) / dssr did not recognize some canonical nucleotide in 6nd4 chain 2
« on: October 21, 2021, 07:52:52 pm »
I am using dssr version v1.9.10-2020apr23 to analyze PDB 6nd4 chain 2. There are 146 standard nucleotides in this chain. However, when I run
x3dna-dssr -i=6nd42.pdb -o=output.dssr
It reports
total number of nucleotides: 144
This also causes the dssr-2ndstrs.dbn files to have 144 rather than 146 positions. It seems dssr disregard residue G248 for unknown reason.
x3dna-dssr -i=6nd42.pdb -o=output.dssr
It reports
total number of nucleotides: 144
This also causes the dssr-2ndstrs.dbn files to have 144 rather than 146 positions. It seems dssr disregard residue G248 for unknown reason.