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RNA structures (DSSR) / Re: issues in converting pdb to "dot bracket notation"
« on: September 14, 2013, 11:30:19 pm »
Thank you Dr. Lu
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RNA structures (DSSR) / issues in converting pdb to "dot bracket notation"
« on: September 14, 2013, 09:17:54 pm »
Hello everyone
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar
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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.