1
RNA structures (DSSR) / Re: issues in converting pdb to "dot bracket notation"
« on: September 14, 2013, 11:30:19 pm »
Thank you Dr. Lu
Q&As related to x3DNA-DSSR; an online community for DNA/RNA structural bioinformatics x3DNA-DSSR · w3DNA
Show Posts
This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.
Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers
Pages: [1]
2
RNA structures (DSSR) / issues in converting pdb to "dot bracket notation"
« on: September 14, 2013, 09:17:54 pm »
Hello everyone
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar
Pages: [1]
Funded by X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids (R24GM153869)
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University