Show Posts
1
RNA structures (DSSR) / issues in converting pdb to "dot bracket notation"
« on: September 14, 2013, 09:17:54 pm »
Hello everyone
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar
I have been trying to use DSSR to obtain a "dot bracket notation" for an RNA structure. The pdb I am using is 3Q1Q and its B chain has 347 nucleotides . The program however uses only 341 nts for chain B as input. The pdb does not have any modified nucleotides and there are no breaks. I am unable to figure out what might be the cause for this. Could you please let me know if it a bug or something I might be doing wrong.
Thank you
Bhaskar