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General discussions (Q&As) / Blocview with .pdb output?
« on: March 24, 2016, 07:52:25 am »
Dear Dr. Xiang Jun,
Is it possible to get a .pdb output from 3dna blocview command or dssr cartoon block option?
I found your article which mentioned that with 3dna it is possible to get .alc file which can be converted to .pdb.
http://x3dna.org/highlights/rectangular-block-expressed-in-pdb-format
However, when I check with 3dna v2.3 , it seems it will only give .png or .r3d output? With dssr I also got only .r3d output.
When I open the r3d file output in pymol, I find that pymol cannot do much modification on it (change color etc) so I'm hoping to get .pdb file.
Thank you,
Zenita
Is it possible to get a .pdb output from 3dna blocview command or dssr cartoon block option?
I found your article which mentioned that with 3dna it is possible to get .alc file which can be converted to .pdb.
http://x3dna.org/highlights/rectangular-block-expressed-in-pdb-format
However, when I check with 3dna v2.3 , it seems it will only give .png or .r3d output? With dssr I also got only .r3d output.
When I open the r3d file output in pymol, I find that pymol cannot do much modification on it (change color etc) so I'm hoping to get .pdb file.
Thank you,
Zenita