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Author Topic: rebuild long DNA molecule  (Read 4481 times)

Offline beetlejuice

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rebuild long DNA molecule
« on: March 02, 2007, 10:14:35 am »
Hello

i'm an undergraduate student trying to have my degree in physics about "coarse grained model for nucleic acid". I used 3DNA package and i wanted to thank the creators of this tool first of all.

I would like to know if, using 3DNA, i can build very long DNA structures specifying only the length of the sequence and the quantities needed to do so. I need it to compare the statistical radial distributions i calculted on a set of real structures with an ideal set of structures with a very long sequence.

I hope you can answer me
Thank you

Offline xiangjun

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« Reply #1 on: March 03, 2007, 12:14:50 am »
Hi,

Welcome to the 3DNA community!

The program "fiber" is your friend to build long regular DNA models. Also check the topic on PDBML in this forum.

HTH,

Xiang-Jun
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.