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Author Topic: how to mutate multiple nucleotides with mutate_bases?  (Read 4296 times)

Offline xzhang1999

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how to mutate multiple nucleotides with mutate_bases?
« on: May 05, 2014, 02:27:56 pm »
Hi,

How can I use mutate_bases to build a homology model using a solved rRNA structure? For example, I want to mutate nucleotides 1-10 in the solved structure with a new sequence "AUAUAUAUAU"?

Thanks much for advice.

Xing

Offline xiangjun

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Re: how to mutate multiple nucleotides with mutate_bases?
« Reply #1 on: May 05, 2014, 03:12:25 pm »
Hi Xiang,

Does not the post on mutate_bases help?

Note that you can use the "-e" option to get a list of all nucleotides in your structure, and then modify the output file to suit your needs.

If you still have problems, please be concrete with a specific example.

HTH,

Xiang-Jun

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.