Netiquette · Download · News · Gallery · Homepage · DSSR · Web-DSSR · DSSR Manual · Reproduce DSSR · DSSR-Jmol · DSSR-PyMOL · Web-SNAP

Author Topic: 3DNA on Cygwin not working  (Read 586 times)

Offline gc2galv

  • regular
  • *
  • Posts: 3
    • View Profile
3DNA on Cygwin not working
« on: March 17, 2017, 04:30:59 am »
Hi,

I am trying to instal 3DNA on windows 10 using Cygwin.
I was following your setup instructions but I was not successfull yet.

In attachment you can see commands I made and the result I got.

Could you please give me an advice how to continue?

Thank you,
Rastislav Galvanek

Offline xiangjun

  • Administrator
  • regular
  • *****
  • Posts: 1215
    • View Profile
    • 3DNA homepage
Re: 3DNA on Cygwin not working
« Reply #1 on: March 17, 2017, 09:54:54 am »
Hi,

Sorry to hear your trouble in getting 3DNA up and running on Window 10 using Cygwin. The error seems to be related to the environment variable X3DNA being set to the bin directory by mistake. Try to remove /bin from the end, as shown below, and report back if that works.

Code: [Select]
export X3DNA=/cygdrive/c/3DNA/x3dna-v2.3
# no /bin at the end

Best regards,

Xiang-Jun
« Last Edit: March 17, 2017, 05:22:01 pm by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline gc2galv

  • regular
  • *
  • Posts: 3
    • View Profile
Re: 3DNA on Cygwin not working
« Reply #2 on: March 18, 2017, 05:31:01 pm »
Hi,

thanks for your answer you were right, that was probably my mistake.
But even after I fixed it as you said it stil doesn't work please see the attached picture.

Thanks,
Rastislav

Offline xiangjun

  • Administrator
  • regular
  • *****
  • Posts: 1215
    • View Profile
    • 3DNA homepage
Re: 3DNA on Cygwin not working
« Reply #3 on: March 18, 2017, 05:40:35 pm »
Hi Rastislav,

Thanks for your response.

Could you replace the '/cygdrive/c/' prefix with 'C:' for X3DNA and PATH, as suggested by the x3dna_setup script? See below:

Quote
export X3DNA='C:/3DNA/x3dna-v2.3'
export PATH='C:/3DNA/x3dna-v2.3/bin':$PATH

Have a try and report back how it goes.

Xiang-Jun



Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline gc2galv

  • regular
  • *
  • Posts: 3
    • View Profile
Re: 3DNA on Cygwin not working
« Reply #4 on: March 19, 2017, 05:51:45 pm »
Hi,
thanks, your advice worked for me :).
Rastislav

 

Created and maintained by Dr. Xiang-Jun Lu[律祥俊]· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.