DSSR-NAR paper

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Reproducing results published in the DSSR-NAR paper Started by xiangjun	0 Replies 3989 Views	July 03, 2015, 11:37:23 am by xiangjun
Figure 2 -- analysis of the yeast phenylalanine tRNA (1ehz) Started by xiangjun	0 Replies 2258 Views	July 08, 2015, 08:33:05 pm by xiangjun
Supplementary Figure 4 -- four multiplets in the env22 twister ribozyme (4rge) Started by xiangjun	0 Replies 1479 Views	July 06, 2015, 01:27:45 pm by xiangjun
Supplementary Figure 8 -- 2nd structure diagram of CRISPR RNA-DNA hybrid (4oo8) Started by xiangjun	0 Replies 1652 Views	July 08, 2015, 01:14:35 am by xiangjun
Summary table Started by xiangjun	0 Replies 1688 Views	July 04, 2015, 07:53:36 am by xiangjun
Figure 6 -- analysis of the CRISPR Cas9-sgRNA-DNA ternary complex (4oo8) Started by xiangjun	0 Replies 2656 Views	July 08, 2015, 08:46:35 pm by xiangjun
Figure 3 -- analysis of the tRNA mimic (4p5j) Started by xiangjun	0 Replies 1610 Views	July 08, 2015, 08:38:47 pm by xiangjun
Supplementary Figure 2 -- three similar base pairs in tRNA and its mimic Started by xiangjun	0 Replies 1818 Views	July 07, 2015, 12:13:55 pm by xiangjun
Output of a sample DSSR run on yeast phenylalanine tRNA (1ehz) Started by xiangjun	0 Replies 1633 Views	July 08, 2015, 12:41:25 pm by xiangjun
Supplementary Figure 3 -- four base triplets in the tRNA mimic (4p5j) Started by xiangjun	0 Replies 1408 Views	July 06, 2015, 12:57:49 pm by xiangjun
Figure 5 -- analysis of the SAM-I riboswitch (2gis) Started by xiangjun	0 Replies 1645 Views	July 08, 2015, 08:43:50 pm by xiangjun
Supplementary Figure 6 -- DSSR-identified k-turn in the SAM-I riboswitch Started by xiangjun	0 Replies 1548 Views	July 07, 2015, 05:34:29 pm by xiangjun
Figure 1 -- summary of methods to identify nucleic acid structural components Started by xiangjun	0 Replies 1612 Views	July 08, 2015, 08:35:14 pm by xiangjun
Supplementary Figure 7 -- eight base triplets in the SAM-I riboswitch (2gis) Started by xiangjun	0 Replies 1595 Views	July 06, 2015, 01:43:45 pm by xiangjun
RNA cartoon-block representations with PyMOL and DSSR Started by xiangjun	0 Replies 4457 Views	July 24, 2015, 02:18:56 pm by xiangjun
Supplementary Figure 9 -- comparison of diloops Started by xiangjun	0 Replies 1384 Views	July 08, 2015, 11:55:59 am by xiangjun
Supplementary Figure 1 -- four base triplets in yeast phenylalanine tRNA (1ehz) Started by xiangjun	0 Replies 2073 Views	July 05, 2015, 08:55:54 am by xiangjun
Figure 4 -- analysis of the env22 twister ribozyme (4rge) Started by xiangjun	0 Replies 1317 Views	July 08, 2015, 08:41:15 pm by xiangjun
Supplementary Figure 5 -- characterizing junction loops in twister ribozyme Started by xiangjun	0 Replies 1451 Views	July 07, 2015, 01:56:51 pm by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu［律祥俊］· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.

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