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Author Topic: x3dna-dssp error in X86_64 system  (Read 2228 times)

Offline liushiyong@gmail.com

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x3dna-dssp error in X86_64 system
« on: June 13, 2014, 06:46:24 pm »
[shiyong@login RNA]$ uname -a
Linux  2.6.9-103.ELsmp #1 SMP Fri Dec 9 04:43:08 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
[shiyong@login RNA]$ ./x3dna-dssr -h
Floating point exception
[shiyong@login RNA]$
« Last Edit: June 13, 2014, 06:49:55 pm by liushiyong@gmail.com »

Offline xiangjun

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Re: x3dna-dssp error in X86_64 system
« Reply #1 on: June 13, 2014, 06:54:33 pm »
Thanks for the report. The current DSSR Linux 64-bit version was compiled on SBGrid CentOS 5 (x86_64), with the following configurations:

Quote
uname -a
Linux sbgrid-c5b-64 2.6.18-194.17.1.el5 #1 SMP Wed Sep 29 12:50:31 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux

So far, yours is the first reported case with such a problem. Your Linux kernel 2.6.9-103.ELsmp is lower than 2.6.18, which is likely the reason for the "Floating point exception". Could you please let me know which specific Linux distribution are you using? Do you have access to a more updated Linux machine?

Xiang-Jun
« Last Edit: June 14, 2014, 12:35:55 am by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

 

Created and maintained by Dr. Xiang-Jun Lu[律祥俊]· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.