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Author Topic: dssr issue (for modified pdb files)  (Read 4903 times)

Offline Auffinger

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dssr issue (for modified pdb files)
« on: September 03, 2013, 06:27:38 am »
Hi Xiang-Jun,

Just encountered following dssr (latest august release)

*** glibc detected *** x3dna-dssr: corrupted double-linked list: 0x000000000227cc50 ***

when using following file : 3CUL_REDO.py.pdb

this file is not an original pdb file, any idea where the error can come from ?
This file is not the only one but the occurrence of such errors is quite rare.

Thanks,

Pascal
pascal auffinger
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Offline xiangjun

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Re: dssr issue (for modified pdb files)
« Reply #1 on: September 03, 2013, 11:40:59 am »
Hi Pascal,

Thanks for reporting the bug, and supplying an example PDB file. I have traced and fixed the 'rare' error and released an updated version of DSSR. Please have a try of beta-r21-on-20130903 and report back any issues you may still have.

Best regards, and enjoy DSSR!

Xiang-Jun
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

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Offline Auffinger

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Re: dssr issue (for modified pdb files)
« Reply #2 on: September 04, 2013, 09:16:51 am »
Thanks, works fine for this file.

Best,

Pascal
pascal auffinger
ibmc-cnrs
15, rue rené descartes
67084 strasbourg cedex
france

web sites:
http://www-ibmc.u-strasbg.fr/arn/Westho ... er_pub.HTM
http://www-ibmc.u-

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.