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General discussions (Q&As) / Support for batch processing?
« on: March 10, 2020, 01:54:27 pm »

I'm using the 'fiber' command in a local installation of 3DNA to generate DNA structures from specified sequences in .pdb format for use in subsequent simulations. However, I would like to generate separate .pdb files for thousands of unique DNA sequences.

Is there a way to use this command on a batch of sequences to generate separate .pdb files for each sequence without manually entering each sequence into the command line?

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.