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General discussions (Q&As) / How 3DNA calculate base overlapping?
« on: December 17, 2020, 09:42:59 pm »

Do you know how 3DNA calculate the overlapping area of bases when calculating the base stacking? By Monte Carlo method or there is an analytical solution? Is there a analytical solution of purine-purine stacking (since purine have two rings)?

Thank you very much!

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The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.