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Messages - Trista

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DNA/RNA-protein interactions (SNAP) / Re: have no output
« on: January 17, 2017, 09:22:15 pm »
Thank you so much!
I will try another rRNA structure!

DNA/RNA-protein interactions (SNAP) / have no output
« on: January 17, 2017, 01:49:25 pm »
i run `snap --get-hbonds -i=1FFK.pdb -o=1.snap` hoping to figure out interactions between the a.a and RNA.
log reported as below:

Processing file '1FFK.pdb' [1FFK]

Time used: 00:00:00:03

But I cannot get my output,1.snap,why?There is no hbonds within this structure?

RNA structures (DSSR) / Re: strange base name
« on: December 15, 2016, 10:07:03 pm »
Thank you so much!
It helps a lot!

RNA structures (DSSR) / strange base name
« on: December 15, 2016, 01:58:46 am »
Some strange base name(B.G-14,B.A23/145) in the dssr output puzzles me a lot, and I cannot find any explanations in the DSSR manual.
What do the slash and dash mean?
What the difference between B.G14 and B.G-14?


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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.