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Messages - Maya12

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Howtos / Re: How to install 3DNA on Cygwin Windows?
« on: September 24, 2016, 02:24:21 am »
Thanks for your quick reply .
This time I did open the cygwin terminal and tried.
after entering ./find_pair -h, no message is coming.
Is it installed properly or not?


Howtos / How to install 3DNA on Cygwin Windows?
« on: September 23, 2016, 08:19:37 am »

I am trying to install X3DNA  on windows using Cygwin. But it is not installing properly as I am not getting any help commands after the last step i.e; ./find_pair -h

Can you help me?

Howtos / Re: How to install 3DNA on Windows?
« on: July 02, 2016, 12:59:19 pm »
Thank you.
 All the three folders are in C: drive. When I am running x3dna_setup, one flash of window is coming. How it should come?

Thanks for your quick follow-up.

Where is 3DNA installed? What's the output of running the "x3dna_setup" Ruby script? There seems no shortcuts. Let's start from the very beginning for trace where the problem is.

Alternatively, you may want to install Cygwin which is closer to a Linux environment. A local expert with command-line skills would certainly be helpful.

Since this thread is becoming quite long, please start a new one. Based on this experience, I will consider to write a new "Howto" post with details on setting up 3DNA on Windows.

Best regards,


Howtos / Re: How to install 3DNA on Windows?
« on: July 02, 2016, 11:53:13 am »
Dear MingyuSun,

Thank you for the reply.
Reinstalled and tried all the steps. The same problem is still there. I am not getting the Mcys icon on desktop.
Will try once again and inform you.

Howtos / Re: How to install 3DNA on Windows?
« on: July 01, 2016, 12:29:56 pm »
Thank you for your reply.
I tried all those commands but nothing happened, though fiber as well as fair_pair exist among files in X3DNA directory. All the three Ruby, MinGW and X3DNA are in C:/.
Can you suggest some way to install X3DNA properly.

Howtos / Re: How to install 3DNA on Windows?
« on: July 01, 2016, 08:26:39 am »
I  tried to install X3DNA on my PC with windows.  and tried to install it using the commands as given in the picture. It says cat: command not found. Please help me in this regard. Also the msys icon is there in the file, not installed in the desktop . When I am double clicking on this icon in the file, an image file is opening instead of the shell. The shell I opened by directly clicking on sh (application file).

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.