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Messages - jenson

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1
Thank you for fixing this  :D

2
Thank you - this works now!

Thanks very much for your help :)

kind regards

3
I have attached my pdb file here too.

Thank you.

4
Thanks for your reply.

I have downloaded your attached fiber model and then uploaded into the analysis and it still says the same problem. Please see attached.

5
w3DNA -- web interface to 3DNA / Fiber pdb not loading in Analysis
« on: July 25, 2019, 09:48:40 am »
Hello,

I was wondering if you could help me solve a problem please.

I have made a fiber B-form DNA with my custom 20 bp sequence using web 3DNA and I am trying to submit the pdb that web3DNA has generated, back into the Analysis page. I want to use this to compare the data with my protein-DNA structure to see any conformation changes.

Unfortunately, when I upload the generated fiber DNA pdb into the Analysis page,  it keeps saying:
'ERROR: The upload file has NO ATOM or Standard base. Please submit another one.'

I have not changed anything in the pdb, it is the same file as was generated by web3DNA 2.0.

Do you have any suggestions?

Thank you for any help you can give with this matter - it is most appreciated.

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.