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Messages - nb0147

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Hello Xiang-Jun

Thank you very much for looking into this.

For the benefit of the forum: I sent Xiang-Jun the PDB files, which he checked with the latest version of x3DNA. They all ran fine. I installed the latest version locally (required an OS update: OSX Lion to OSX El Capitan, which I probably should have done anyway ;0) and they all ran fine for me as well.

Thanks again to Xiang-Jun for some lovely software and excellent tech support.


w3DNA -- web interface to 3DNA / w3DNA hanging on some structures
« on: May 12, 2016, 06:53:40 am »

I've been using w3DNA to analyse a family of structures (very useful and straightforward, thank you very much). However, it is just hanging with some of the structures.

They have non-natural bases in them, but this can't be the only reason, as I have two chemically identical structures in very slightly different conformations, one runs fine and the other hangs forever.

Any thoughts would be much appreciated,


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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.