Show Posts

This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.


Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Messages - nb0147

Pages: [1]
1
Hello Xiang-Jun

Thank you very much for looking into this.

For the benefit of the forum: I sent Xiang-Jun the PDB files, which he checked with the latest version of x3DNA. They all ran fine. I installed the latest version locally (required an OS update: OSX Lion to OSX El Capitan, which I probably should have done anyway ;0) and they all ran fine for me as well.

Thanks again to Xiang-Jun for some lovely software and excellent tech support.

Nick

2
w3DNA -- web interface to 3DNA / w3DNA hanging on some structures
« on: May 12, 2016, 06:53:40 am »
Hello

I've been using w3DNA to analyse a family of structures (very useful and straightforward, thank you very much). However, it is just hanging with some of the structures.

They have non-natural bases in them, but this can't be the only reason, as I have two chemically identical structures in very slightly different conformations, one runs fine and the other hangs forever.

Any thoughts would be much appreciated,

Nick

Pages: [1]

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.