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Messages - namazi

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RNA structures (DSSR) / modified RNA
« on: June 10, 2015, 12:00:53 pm »
Hi. I want to generate the modified RNA that bases are A/U/C/G; but suger is changed. I just access to "gromacs" as a MD package at now; gromacs couldn't recognize this modified RNA. At first i simulate standard RNA with AMBER force field of GROMACS package but I don't know what I should to do later....Can DSSR software accept this job about simulate this modified RNA? please help me.
Best Regards.

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The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.