Messages

1

General discussions (Q&As) / Re: x3dna_ensemble is not working for hairpin loop structures

« on: February 11, 2016, 06:50:24 am »

Thank you Xiang-Jun. I checked and found that bp_order.dat file was not correct. Now it is working fine.
Thank you

Sudhanshu Shanker

2

General discussions (Q&As) / x3dna_ensemble is not working for hairpin loop structures

« on: February 10, 2016, 11:10:19 am »

x3dna_ensemble is not working for hairpin loop structures made up of only one strand as for pdb id '2n4l' which contains multiple models. When this file is being processed by x3dna_ensemble, it is prompting the message :
> x3dna_ensemble analyze -e 2n4l.pdb -b bp_order.dat
Process model #1        1 / 10
Not a duplex: <>

I tried this for other loop structures too. Please check this. If i am doing something wrong kindly inform me.

Best,

Sudhanshu Shanker