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General discussions (Q&As) / Is there any tool to convert xyz file to pdb file that can be accepted by 3dna?
« on: April 03, 2019, 11:08:40 pm »
Hi Xiangjun,
I'm trying to convert an xyz file to a pdb file to use it in 3dna (I got the xyz file from other program which can not provide pdb file directly). I have tried VESTA and OpenBabel but they failed to create a pdb file that can be used in 3dna (although VESTA can work normally with these files). After a quick search I have found other similar problems posted before in the forum (like Topic: PDB conversion on: May 29, 2017, 06:49:35 am), but I have not found a quick solution to my problem. So I'm here to ask if there is any tool that can do the job.
My xyz file is attached below.
Best regards,
Erik
I'm trying to convert an xyz file to a pdb file to use it in 3dna (I got the xyz file from other program which can not provide pdb file directly). I have tried VESTA and OpenBabel but they failed to create a pdb file that can be used in 3dna (although VESTA can work normally with these files). After a quick search I have found other similar problems posted before in the forum (like Topic: PDB conversion on: May 29, 2017, 06:49:35 am), but I have not found a quick solution to my problem. So I'm here to ask if there is any tool that can do the job.
My xyz file is attached below.
Best regards,
Erik