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Topics - mahfuz

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RNA structures (DSSR) / Seeking help with DSSR (Base Pair and Stacking)
« on: October 05, 2018, 05:49:11 pm »
Hi Dr. Xiang-Jun Lu,

I'm working on your annotation tool DSSR and trying to get the base-pair and stacking information from DSSR annotation. The base-pair part is clear enough but I'm facing problem for finding the stackings. The canonical and non-canonical stackings are not clear to me. I'm also trying to get the direction of the stackings (upword/downword/inward/outward).

Thanks

Mahfuz

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.